fMRI

 General fMRI analysis how to:

• Run multi-voxel pattern analyses (MVPA): In the Human Neuroscience Laboratory, we use the Princeton MVPA toolbox and in-house Matlab scripts. Please contact Dr. Thakral for a tutorial or general help.
  • If interested in other approaches, like using the The Decoding Toolbox, see here for an amazing set of helpful how-to videos
• Run a functional connectivity analysis in the CONN toolbox, see here for a great set of helpful how-to videos
• A great tutorial on scripting SPM analyses in Matlab: https://www.fmrwhy.com/2018/06/28/spm12-matlab-scripting-tutorial-1/
• Do you have any interest in using FSL? If so, checkout these videos: https://www.youtube.com/c/FSLCourse/playlists
• Extract parameter estimates and conduct a timecourse analysis in SPM12: See this PowerPoint presentation (for scripts see this folder)

Other helpful links:

• Run mriqc and fmriprep on the BC cluster: http://www.thememolab.org/resources/2018/02/05/running-bidsapps-on-cluster/