Hierarchical Gaussian Process Regression for Meta-Learning of Molecular Geometry Optimization
FY22 SI-GECS Type 2
Abstract
Quantum chemistry uses quantum mechanics for the first-principle exploration of chemical systems. In principle, all chemical phenomena can be studied by solving the Schrödinger equation, the approximate solutions of which, in practice, are computationally very expensive to find. From the approximate solutions of the many-electron Schrödinger equation, we can construct the potential-energy surfaces (PESs) – a fundamental concept used in chemistry.
A PES is a multi-dimensional function that maps a given molecular geometry to electronic-structure energy. Characterizing the PES, a problem known as geometry optimization, is important as correctly identifying the local minima and saddle points of a PES can be applied to predict how fast a reaction occurs and provide atomistic-level insights.
Given the recent success of machine learning in solving computational tasks previously thought unsolvable, we propose to develop methods that apply Bayesian learning to perform meta-learning to speed up and scale geometry optimization of molecular PESs for main-group molecules. The idea of meta-learning is that experience from optimizing different molecules can be adapted to novel molecular systems and, consequently, be used to speed up the optimization of those systems. Reliable and efficient structural determination is the cornerstone for constructing comprehensive mechanistic analysis for large-scale atmospheric and materials modelings.
Presentations
- "Localized Surface Plasmonic Catalysis and Local Minima Search Boosted by Gaussian Process," Molecular Interactions and Dynamics (MID) Gordon Research Conference, July 2022
- “Probabilistic Programming and Molecular Optimization”, Institute for Fundamental Research in Informatics, June 2022
- “Physics inspired Bayesian learning for potential energy surface exploration,” American Chemical Society, March 2023
Publications
- D. Huang, C. Teng, J. L. Bao,* and J.-B. Tristan,* “mad-GP: Automatic Differentiation of Gaussian Processes for Molecules and Materials”, Journal of Mathematical Chemistry, 60, 969–1000 (2022)
- D. Huang, J. L. Bao,* and J.-B. Tristan,* “Geometry Meta-Optimization”, The Journal of Chemical Physics, 156, 134109 (2022)
- C. Teng, Y. Wang, D. Huang, K. Martin, J.-B. Tristan,* and J. L. Bao,* “Dual-Level Training of Gaussian Processes with Physically Inspired Priors for Geometry Optimizations”, Journal of Chemical Theory and Computation, published online (2022)
- C. Teng, D. Huang, & J. L. Bao. "A spur to molecular geometry optimization: Gradient-enhanced universal kriging with on-the-fly adaptive ab initio prior mean functions in curvilinear coordinates", The Journal of chemical physics (2023)
Additional Grants
- American Chemistry Society Petroleum Research Fund ($125,000)
Students Trained
- 4 Undergraduate Students
- Elizabeth Donahue, Department of Chemistry
- Weiming Qin, Department of Chemistry
- Gina Chun, Department of Chemistry
- Ronan Manvelian, Department of Chemistry
- 2 Graduate Students
- Chong Teng, Department of Chemistry
- Yang Wang, Department of Chemistry
- Chong Teng, Department of Chemistry
- 1 Postdoctoral Student
- Daniel Huang, Department of Chemistry
Additional Accomplishments
- Developed Github package
- Contributed to course development (Intro to Machine Learning with Applications to Chemistry, Fall 2021)