Boston College Study Offers a New View on Proteins

Boston College Study Offers a New View on Proteins

By Patricia Delaney
Associate Director of Public Affairs

New findings on the workings of proteins by a team of chemists based at Boston College could have implications for some consumer products, and also offer a potential lead in developing treatments for Alzheimer's disease.

The researchers, including Chemistry faculty Prof. Martha Teeter and Assoc. Prof. Udayan Mohanty, studied the role of the protein dynamics and solvent in protein function. Their findings, which identify a critical role for water in protein function, could have positive ramification for the design of many proteins, from medicinals to laundry detergent enzymes, making them more stable under adverse conditions such as acidity extremes or high temperature.

Their work also offers insight into the role of water in stabilizing non-pathogenic forms of proteins such as those associated with Alzheimer's disease.

Teeter and Mohanty's collaborators in the study were Boguslaw Stec, who was a post-doctoral fellow at BC and now teaches at Rice University, and Akihito Yamano, a former graduate student of Teeter working for the Japanese firm Rigaku. The team published its findings in the Sept. 25 edition of Proceedings of the National Academy of Science.

Teeter, Yamano, Stec and Mohanty have demonstrated through very high-resolution protein X-ray crystallography that protein and water adopt a glassy state at the same temperature that protein function ceases. This state, formed at 135 degrees below zero Fahrenheit, consists of clusters of protein surface atoms and solvent water that move in a coordinated fashion.

"Glasses are substances that become very viscous on approaching a glass transition temperature," said Teeter. "They were thought to adopt completely random arrays, which is why you can see through window glass. However, at a protein surface, the glass has a special character due to the polar (water-soluble) and non-polar (greasy) parts of the surface. Instead of being random, they form regions of cooperatively rearranging clusters of water and protein surface atoms.

"These results agree with water's glass-forming properties and suggest that disorder (entropy) decreases with decreasing temperature for the water/protein system below the glass transition temperature."

Since the early 1980s, she said, protein surface atoms were described as having an ensemble of states with nearly equal energy, not a single arrangement at the surface. The present work lends functional importance to such ensembles at the protein surface and shows that water may provide the means for linking and coordinating these movable parts of the protein. The protein glass transition temperature can be influenced by salt, by the solvent properties or by the protein sequence, hence adapting the protein and the organism to function under a variety of conditions.

"We knew that organisms function at extreme conditions of temperature or salt in part because the proteins in them adapt and function under these adverse conditions," said Teeter. "The ability of a protein to function now has been connected both with the solvent around it and with its protein/water dynamics or mobility. Others have shown that dry proteins do not function, but now we understand that hydrating water must lubricate surface residues through cooperatively rearranging clusters so that surface residues will support function.

"Such glassy transitions would be important for the function of any solvated large biomolecule - proteins, DNA, RNA or polysaccharides," she added. "Based on these findings, protein and nucleic acid medicinals could be stored at low enough temperatures to inactivate them reversibly and protect them from contaminating enzymatic degradation or oxidation.

"Further, understanding the role of the protein surface residues in this glass transition permits proteins such as medicinals or laundry detergent enzymes to be designed that have longer half-lifes, that is, are more stable under adverse conditions such as acidity extremes or high temperature.

"There are also implications of protein/water mobility for disease. Proteins that are hydrated by water maintain flexibility, as the present work shows. This ability of hydrated proteins to adopt several states may protect proteins from forming pathogenic aggregates, such as Alzheimer or prion amyloid and their analogs."

 

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